Pondicherry has Two Government Medical College that is Jawaharlal Institute of Postgraduate Medical Education & Research, Puducherry and Indira Gandhi Medical College & Research Institute, In Pondicherry total 423 MBBS Seats availab in Government Medical Colleges.
| S.No | College Name | University | Management | Estd | Seats |
| 1 | Jawaharlal Institute of Postgraduate Medical Education & Research, Puducherry | Statutory Autonomous, Puducherry | Central Govt. | 1956 | 243 |
| 2 | Indira Gandhi Medical College & Research Institute, Puducherry | Pondicherry University | State Govt. | 2010 | 180 |
| Total Number of MBBS | 423 | ||||